PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 804aa    MW: 89631.7 Da    PI: 6.4793
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.4e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +   +  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_011098000.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217
                     99*****************************7444..44459************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_011098000.1 218 KNQLLLGIRRA 228
                     9999****997 PP

2Auxin_resp119.82.2e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+v+YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gtv+g+sdldpvrWpnS+Wrs+k
  XP_011098000.1 253 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTVTGISDLDPVRWPNSHWRSVK 336
                     79********************************87599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.07E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-41120242IPR015300DNA-binding pseudobarrel domain
CDDcd100172.36E-21126227No hitNo description
PROSITE profilePS5086312.308127229IPR003340B3 DNA binding domain
SMARTSM010191.1E-23127229IPR003340B3 DNA binding domain
PfamPF023622.2E-21127228IPR003340B3 DNA binding domain
PfamPF065072.8E-34253336IPR010525Auxin response factor
SuperFamilySSF542771.96E-7674754No hitNo description
PfamPF023091.5E-7676765IPR033389AUX/IAA domain
PROSITE profilePS5174524.028680764IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MKLSTSGLSQ QSHEGEKKCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDAQIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDA YLPVELGTPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPAQELIAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SCFTVFYNPR ASPSEFVIPL SKYVKAVFHT RVSVGMRFRM  300
LFETEESSVR RYMGTVTGIS DLDPVRWPNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPWYPG ASSFQGMFPW IQQQRLDPMG SSNDFGQQYQ AMLAGGLQNF  420
GSGELPKHQL MHFQQPVHYL QHSGNHNPVS QQQQVVQPSV SLHMLPAQTQ MLSDNMQRPA  480
EQQVDHQSQE HLQQHNYQEA FLIQHDKLQQ RQSLDILSPS FTKSDFTNSN SNFSAPTAQS  540
CIQNMLGSIC HEGNGNLLGF SRSGPQILTE QPTQQSWVPK FAQSPVSGCS NSKPIPSYSG  600
KDGSIEQETC NLDVQNQALF GANIDSSGLL MHIGTSSVHA DMSSMPLGAS GHQSPLYGYV  660
QDSSDVLHST GQVDQSTPDH TFVKVYKTGS VGRSLDIGRF NSYQELRQEL GQMFGIKGLL  720
EDPQRSGWQL VFVDRENDVL LLGDDPWEAF VNNVWYIKIL SPEDVLRLGK DEAESLSRSA  780
VERIPNDDTQ NPVCGLPSLG SLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601635747388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098000.10.0PREDICTED: auxin response factor 8-like isoform X3
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A068U2C00.0A0A068U2C0_COFCA; Auxin response factor
STRINGSolyc02g037530.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8